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Full Length Article| Volume 225, P39-46, May 2023

Pathway-driven rare germline variants associated with transplant-associated thrombotic microangiopathy (TA-TMA)

  • Author Footnotes
    1 Co-first authors with equal contribution.
    Zhihui Zhang
    Footnotes
    1 Co-first authors with equal contribution.
    Affiliations
    Institute for Clinical & Translational Research, Baylor College of Medicine, Houston, TX, United States of America
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  • Author Footnotes
    1 Co-first authors with equal contribution.
    Wei Hong
    Footnotes
    1 Co-first authors with equal contribution.
    Affiliations
    Institute for Clinical & Translational Research, Baylor College of Medicine, Houston, TX, United States of America
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  • Qian Wu
    Affiliations
    Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America
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  • Spiridon Tsavachidis
    Affiliations
    Section of Epidemiology and Population Science, Baylor College of Medicine, Houston, TX, United States of America
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  • Jian-rong Li
    Affiliations
    Institute for Clinical & Translational Research, Baylor College of Medicine, Houston, TX, United States of America
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  • Christopher I. Amos
    Affiliations
    Institute for Clinical & Translational Research, Baylor College of Medicine, Houston, TX, United States of America

    Section of Epidemiology and Population Science, Baylor College of Medicine, Houston, TX, United States of America
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  • Chao Cheng
    Affiliations
    Institute for Clinical & Translational Research, Baylor College of Medicine, Houston, TX, United States of America
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  • Sarah E. Sartain
    Affiliations
    Section of Hematology-Oncology, Department of Pediatrics, Baylor College of Medicine, Houston, TX, United States of America
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  • Vahid Afshar-Kharghan
    Affiliations
    Section of Benign Hematology, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America
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  • Jing-fei Dong
    Affiliations
    BloodWorks Northwest Research Institute, Seattle, WA, United States of America
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  • Pavan Bhatraju
    Affiliations
    Division of Pulmonary Critical Care and Sleep Medicine, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States of America
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  • Paul J. Martin
    Affiliations
    Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America

    Division of Medical Oncology, Department of Medicine, University of Washington School of Medicine, Seattle, WA, United States of America
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  • Robert S. Makar
    Affiliations
    Division of Hematology and Blood Transfusion Service, Massachusetts General Hospital, Boston, MA, United States of America

    Division of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center, Boston, MA, United States of America
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  • Author Footnotes
    2 Co-senior authors with equal contribution.
    Pavan K. Bendapudi
    Footnotes
    2 Co-senior authors with equal contribution.
    Affiliations
    Division of Hematology and Blood Transfusion Service, Massachusetts General Hospital, Boston, MA, United States of America

    Division of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center, Boston, MA, United States of America

    Harvard Medical School, Boston, MA, United States of America
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  • Author Footnotes
    2 Co-senior authors with equal contribution.
    Ang Li
    Correspondence
    Corresponding author at: Baylor College of Medicine, One Baylor Plaza, 011DF, Houston, TX 77030, United States of America.
    Footnotes
    2 Co-senior authors with equal contribution.
    Affiliations
    Section of Hematology-Oncology, Department of Medicine, Baylor College of Medicine, Houston, TX, United States of America
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  • Author Footnotes
    1 Co-first authors with equal contribution.
    2 Co-senior authors with equal contribution.

      Highlights

      • It is unclear if germline mutations in complement genes are associated with TA-TMA.
      • We performed a genetic association case-control study with 100 cases and 98 controls.
      • We did not observe rare variants in complement genes in association with TA-TMA.
      • 29% TA-TMA and 33% controls had at least 1 rare variant in complement genes.
      • Rare variants in LRP1 (VWF clearance/oxidative stress) were associated with TA-TMA.

      Abstract

      The significance of rare germline mutations in transplant-associated thrombotic microangiopathy (TA-TMA) is not well studied. We performed a genetic association study in 100 adult TA-TMA patients vs. 98 post-transplant controls after matching by race, sex, and year. We focused on 5 pathways in complement, von Willebrand factor (VWF) function and related proteins, VWF clearance, ADAMTS13 function and related proteins, and endothelial activation (3641variants in 52 genes). In the primary analysis focused on 189 functional rare variants, no differential variant enrichment was observed in any of the pathways; specifically, 29 % TA-TMA and 33 % controls had at least 1 rare complement mutation. In the secondary analysis focused on 37 rare variants predicted to be pathogenic or likely pathogenic by ClinVar, Complement Database, or REVEL in-silico prediction tool, rare variants in the VWF clearance pathway were found to be significantly associated with TA-TMA (p = 0.008). On the gene level, LRP1 was the only one with significantly increased variants in TA-TMA in both analyses (p = 0.025 and 0.015). In conclusion, we did not find a significant association between rare variants in the complement pathway and TA-TMA; however, we discovered a new signal in the VWF clearance pathway driven by the gene LRP1 among likely pathogenic variants.

      Keywords

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